i2b2 Summary

Tags: Lcbru Software Category JBOSS

Overview

i2b2 is a data warehouse application used to identify cohorts of patients for clinical research.

• i2b2 LCBRU Customisations

How To

• i2b2 HowTo Install
• i2b2 HowTo Install Using Docker
• i2b2 HowTo Upgrade to Version 1.6
• i2b2 HowTo Manage Users
• i2b2 HowTo Create a Project
• i2b2 HowTo Get a new Project to AutoUpdate
• i2b2 HowTo Create an Ontology
• i2b2 HowTo Import DM+D Data
• i2b2 HowTo Start JBOSS
• i2b2 HowTo Switch on Web Services
• i2b2 HowTo Debug i2b2
• i2b2 HowTo Join Mailing List
• i2b2 HowTo Create Concept Codes in an Ontology
• i2b2 HowTo Add the Concept codes to the Observation_Fact table

Gotchas

• i2b2 Gotchas Timeout on Complex Exports
• i2b2 Gotchas Workbench Missing en_GB Properties
• i2b2 Gotchas Concept Code in Query not in Quotes
• i2b2 Gotchas Name Not Found Exception
• i2b2 Gotchas RDBMS Not Transparent
• i2b2 Gotchas Domain

Modules and Utilities

• i2b2 Excel Spreadsheet Extract
• i2b2 Imaging Cell
• i2b2 Mapped Importer
• i2b2 Onyx Importer
• i2b2 Workbench

Community

• ​Git Hub Repository
• ​i2b2 Website
• ​i2b2 Wiki
• i2b2 AUG 2010
• i2b2 AUG 2013
• i2b2 AUG 2015

• To sign up to the mailing list by emailing Susanne Churchill

Instances

For now: SystemAdmin

• i2b2 Instance Live

Databases

Each project of i2b2 has 3 databases:

• Security Database (usually ends '_workdata')
• Ontology Database (usually ends '_metadata')
• Data Database (usually ends '_data')

See: i2b2 Database Structure

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