= i2b2 Summary

Tags: [[Lcbru Software Category]] [[JBOSS]]

== Overview

i2b2 is a data warehouse application used to identify cohorts of patients for clinical research.

- [[i2b2 LCBRU Customisations]]

== How To

- [[i2b2 HowTo Install]]
- [[i2b2 HowTo Install Using Docker]]
- [[i2b2 HowTo Upgrade to Version 1.6]]
- [[i2b2 HowTo Manage Users]]
- [[i2b2 HowTo Create a Project]]
- [[i2b2 HowTo Get a new Project to AutoUpdate]]
- [[i2b2 HowTo Create an Ontology]]
- [[i2b2 HowTo Import DM+D Data]]
- [[i2b2 HowTo Start JBOSS]]
- [[i2b2 HowTo Switch on Web Services]]
- [[i2b2 HowTo Debug i2b2]]
- [[i2b2 HowTo Join Mailing List]]
- [[i2b2 HowTo Create Concept Codes in an Ontology]]
- [[i2b2 HowTo Add the Concept codes to the Observation_Fact table]]

== Gotchas

- [[i2b2 Gotchas Timeout on Complex Exports]]
- [[i2b2 Gotchas Workbench Missing en_GB Properties]]
- [[i2b2 Gotchas Concept Code in Query not in Quotes]]
- [[i2b2 Gotchas Name Not Found Exception]]
- [[i2b2 Gotchas RDBMS Not Transparent]]
- [[i2b2 Gotchas Domain]]

== Modules and Utilities

- [[i2b2 Excel Spreadsheet Extract]]
- [[i2b2 Imaging Cell]]
- [[i2b2 Mapped Importer]]
- [[i2b2 Onyx Importer]]
- [[i2b2 Workbench]]

== Community

- [[https://github.com/i2b2|Git Hub Repository]]
- [[https://www.i2b2.org|i2b2 Website]]
- [[https://community.i2b2.org/wiki/dashboard.action|i2b2 Wiki]]
- [[i2b2 AUG 2010]]
- [[i2b2 AUG 2013]]
- [[i2b2 AUG 2015]]

- To sign up to the mailing list by emailing Susanne Churchill

== Instances

For now: [[SystemAdmin]]

- [[i2b2 Instance Live]]

== Databases

Each project of i2b2 has 3 databases:
- Security Database (usually ends '_workdata')
- Ontology Database (usually ends '_metadata')
- Data Database (usually ends '_data')

See: [[i2b2 Database Structure]]

[[BackLinks]]