OpenSpecimen Summary

Tags: LcbruSystem

Overview

Sample management tool formerly called CaTissue which was developed by the National Cancer Institute, now developed by Krishagni.

Basic Overview

Storage Container

hierarchical set of containers that store samples. For example, box, draw, shelf, freezer, room, building

Storage Type

A template for a Storage Container

Site

An real instance of a storage

Collection Protocol

A series of samples and aliquots derived from samples for a particular study.

How To

• OpenSpecimen HowTo Install
• OpenSpecimen HowTo Restart
• OpenSpecimen HowTo Manage Users
• OpenSpecimen HowTo Create Protocol
• OpenSpecimen HowTo Create Searches
• OpenSpecimen HowTo View Map of Locations
• OpenSpecimen HowTo Backup Database for Development Server
• OpenSpecimen HowTo Use Expedited Entry for a Study
• OpenSpecimen HowTo Specify Format of Master Patient Index ID
• OpenSpecimen HowTo Register a participant into a protocol using the standard UI
• OpenSpecimen HowTo Register a participant into a protocol using the expedited UI
• OpenSpecimen HowTo Create Containers
• OpenSpecimen HowTo Import Bulk Data

Modules and Updates

• CaTissueClientAPI

Community / Documentation

• ​Open Specimen Website
• ​Open Specimen Forum
• ​REST API Documentation
• ​Deployment and Configuration

Instances

For now: SystemAdmin

• OpenSepcimen Instance Development
• OpenSepcimen Instance Live
• OpenSepcimen Instance Training

Legacy Pages

• CaTissue
• CaTissueBulkOperations
• CaTissueClientAPI
• CaTissueUpgrade
• CaTissueUseCases
• CaTissue search functions

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