Welcome to the LCBRU Informatics Platform wiki

Lcbru IT Systems

• About us

The LCBRU public / general website is at ​http://www.le.ac.uk/lcbru/

This is the wiki for the Leicester Cardiovascular BRU informatics team. We use it to document the systems we have in use, the studies we are supporting, and the configurations, settings and other necessary information for keeping everything running smoothly. If you are a member of LCBRU staff, please do help us by editing the wiki regularly - you will need to log in (menu in top right corner of the page) to edit content. Don't be scared of making edits - we can always roll back to a previous version if something goes wrong.

We also use this system for recording 'tickets' when work needs to be done. Again, you will need to be logged in to create, edit or view tickets.

Please remember that this wiki is visible to anonymous visitors, so that we can share information with collaborators and colleagues outside the LCBRU. But that means we must not include any passwords or usernames in the documentation, or any example data which is not entirely fabricated. Items which must be kept confidential should be recorded in tickets, not in the wiki.

• LCBRU studies supported
  • Aneurysms Study - Matt Bown's consortium on female screening for aortic aneurysms
  • BRICCS Study - where it all began
    • Aortic Stenosis Study
    • BRAVE Study
    • Exome Sequencing Project
  • DHF Study - Diastolic Heart Failure
  • DIASTOLIC Study
  • DREAM Study - Daily REmote Ischaemic Conditioning Post-Acute Myocardial Infarction
  • EDIFY
  • EMMACE-4 Study - observational study of ACS acute care
  • GENVASC Study - recruitment across primary care
  • Global Leaders
  • GRAPHIC2 Study - Genetic factors in hypertension
  • HDL Ethnicity Study - a study into HDL across ethnic groups
  • MVO Study - Microvascular Obstruction
  • NIHR BioResource - contributing to a national facility for translational medicine
  • PRESTIGE Study
  • SCAD Study - Spontaneous Coronary Artery Dissection
  • SCAD and CAE Study - Extension of the SCAD Study study to include patients with Coronary Artery Aneurysms / Ectasia
  • Telomere Length Study
  • TMAO Study
  • TOTAL Study - Routine aspiration thrombectomy versus PPCI alone

• Component pages
  • IdLabelPrinting
  • MRBS
  • Onyx
    • OnyxCode
    • OnyxQuestionnaire - Developing (and Maintaining) a Questionnaire
    • OnyxDeployment - Deploying a Questionnaire
    • OnyxPrismClient
    • Onyx Export and Purge
    • OnyxExportOntology Discussion on deriving an initial ontology
    • OnyxTestSystem
    • OnyxVersions
    • OnyxDatabaseReporting
    • OnyxDataValidation
    • Onyx to PDO Assumptions underlying importing facts into i2b2 from the BRICCS questionnaire
    • Onyx to CiviCRM
  • PMI Lookup
  • RealWorldRecruitment
    • AS Study specific
  • REDCap
    • REDCap Installation
    • REDCap Usage
    • REDCap to i2b2
  • MySql
    • MySql Tips and Tricks

• Data
  • Read Codes
  • QRISK
  • DM+D
  • ATC Codes
  • Office for National Statistics
  • Hospital Episode Statistics (HES)
  • Secondary Use Service (SUS)
  • Genomics Files
  • Clinical Coding
  • DICOM

• SystemAdmin System admin information for the LCBRU server infrastructure.

• Infrastructure components
  • Backups data backup requirements and processes.
  • DNS DNS configuration for briccs.org.uk
  • Eclipse development tool kit.
  • JBoss Settings, experiences and gotchas from working with the JBoss Application Server
  • Maven development tool kit.
  • MS SQL issues MS SQL Server commands, gotchas and bugs
  • Oracle Oracle commands, gotchas and bugs
  • ServiceDeployment recommendations for flexible service deployment.
  • SSH ssh keys and configuration.
  • Subversion source code repository.
  • Tomcat Middleware for the Onyx questionnaire tool.
  • Trac issue tracking system.
  • VirtualBox VirtualBox commands and bugs

• Components under consideration, or not implemented
  • C3PR
  • caAERS
  • EDGE - possibly

• Miscellaneous
  • WebLinks

• GoogleApps
  • Email ​http://mail.briccs.org.uk
  • Docs ​http://docs.briccs.org.uk

• User pages
  • DaveMorris
  • JeffLusted
  • NickHolden
  • ChrisGreengrass
  • VasilStezhka
  • JasonSelby
  • NileshSamani
  • TimBeck

Trac notes

This wiki and issue tracking system is using Trac. Trac is a minimalistic approach to web-based management of software projects. Its goal is to simplify effective tracking and handling of software issues, enhancements and overall progress.

All aspects of Trac have been designed with the single goal to help developers write great software while staying out of the way and imposing as little as possible on a team's established process and culture.

As all Wiki pages, this page is editable, this means that you can modify the contents of this page simply by using your web-browser. Simply click on the "Edit this page" link at the bottom of the page. WikiFormatting will give you a detailed description of available Wiki formatting commands.

"trac-admin yourenvdir initenv" created a new Trac environment, containing a default set of wiki pages and some sample data. This newly created environment also contains documentation to help you get started with your project.

You can use trac-admin to configure ​Trac to better fit your project, especially in regard to components, versions and milestones.

TracGuide is a good place to start.

Enjoy!
The Trac Team

Starting Points

• TracGuide -- Built-in Documentation
• ​The Trac project -- Trac Open Source Project
• ​Trac FAQ -- Frequently Asked Questions
• TracSupport -- Trac Support

For a complete list of local wiki pages, see TitleIndex.