i2b2 Summary

Tags: LcbruSystem UhlLinuxServer JBOSS

Overview

i2b2 is a data warehouse application used to identify cohorts of patients for clinical research.

How To

• i2b2 HowTo Install
• i2b2 HowTo Upgrade
• i2b2 HowTo Manage Users
• i2b2 HowTo Create a Project
• i2b2 HowTo Create an Ontology

Modules and Utilities

• i2b2 Excel Spreadsheet Extract
• i2b2 Mapped Importer
• i2b2 Onyx Importer

Community

• ​i2b2 Website
• ​i2b2 Wiki

Instances

For now: SystemAdmin

• i2b2 Instance Live
• i2b2 Instance Test

Databases

Each project of i2b2 has 3 databases:

• Security Database (usually ends '_workdata')
• Ontology Database (usually ends '_metadata')
• Data Database (usually ends '_data')

Check List

Standard

• [ ] How do we sign up to news group AskNick
• [ ] Latest version in source control?

Specific

Legacy Pages

Error: Macro BackLinks(i2b2 Legacy) failed

'Environment' object has no attribute 'get_db_cnx'

Error: Macro BackLinks(None) failed

'Environment' object has no attribute 'get_db_cnx'