OpenSpecimen Summary

Tags: LcbruSystem

Overview

Sample management tool formerly called CaTissue which was developed by the National Cancer Institute, now developed by Krishagni.

Basic Overview

Storage Container

hierarchical set of containers that store samples. For example, box, draw, shelf, freezer, room, building

Storage Type

A template for a Storage Container

Site

An real instance of a storage

Collection Protocol

A series of samples and aliquots derived from samples for a particular study.

How To

• OpenSpecimen HowTo Install
• OpenSpecimen HowTo Restart
• OpenSpecimen HowTo Manage Users
• OpenSpecimen HowTo Create Protocol
• OpenSpecimen HowTo Create Searches
• OpenSpecimen HowTo View Map of Locations

Modules and Updates

• CaTissueClientAPI

Community

• ​Open Specimen Website
• ​Open Specimen Forum

Instances

For now: SystemAdmin

• OpenSepcimen Instance Development
• OpenSepcimen Instance Live
• OpenSepcimen Instance Training

Check List

Standard

• [ ] Do I have admin rights to system?
• [ ] Can I log on to system?
• [ ] Can I restart the server?
• [ ] Can I create a user?
• [ ] Can I see the errors?
• [ ] Does it use Nick's email or other account details?
• [ ] Who do we contact for help
• [ ] Basic training
• [ ] Latest version in source control?
• [ ] How is it Backed Up?
• [ ] Database server / username / password
• [ ] Do I have admin database access?
• [ ] Database read only account?
• [ ] Apache config
• / Can I log onto the community websites?

Specific

• [ ] How to create protocols
• [ ] Backup protocols

Legacy Pages

• CaTissue
• CaTissueBulkOperations
• CaTissueClientAPI
• CaTissueUpgrade
• CaTissueUseCases
• CaTissue search functions

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