DataIntegration NIHR Bioresource Interval to NIHR Bioresource i2b2

Tags: DataIntegrationJob

• Status: StatusNotWritten
• Source: DataSource NIHR Bioresource Interval
• Destination: DataIntegration Destination NIHR Bioresource i2b2
• Class: DataIntegrationClass External to i2b2
• Technology: i2b2 Mapped Importer

Details

Format

XML

Example

​https://sites.google.com/a/nihr.ac.uk/nihr-bioresource-it/projects/interval

• participant_schema_V1_201512.xsd
• example_participant_schema_V1_201512.xml

Data

​https://me-sftp.medschl.cam.ac.uk

Process

1. Download the data from ​https://me-sftp.medschl.cam.ac.uk and copy it onto the uhlbriccsdev server in the directory /home/richard/projects/XmlToCsv/data/interval/live_data/{date of files}/
2. Decrypt the files using the command gpg -d {filename}.zip.gpg > {filename}.zip and entering the pass phrase.
3. Unzip the files using the command unzip {filename}.zip
4. ...

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