Changes between Version 12 and Version 13 of i2b2 Mapped Importer


Ignore:
Timestamp:
05/29/14 11:02:50 (10 years ago)
Author:
Richard Bramley
Comment:

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  • i2b2 Mapped Importer

    v12 v13  
    1010
    1111== Outputs
    12 The data can be outputted as either an i2b2 PDO XML file or loaded directlt into an i2b2 database (currently only using Microsoft SQL Server).
     12The data can be outputted as either an i2b2 PDO XML file or loaded directly into an i2b2 database (currently only using Microsoft SQL Server).
    1313
    1414== Settings
    15 The source and output to used is defined is a YAML file.  By default this file is called settings.yaml in the application root directory, but the setings file path can be defined using the {{{-s=xxx}}} or {{{--settingsFilePath=xxx}}} command line arguments.
     15The source and output to be used is defined is a YAML file.  By default this file is called settings.yaml in the application root directory, but the setings file path can be defined using the {{{-s=xxx}}} or {{{--settingsFilePath=xxx}}} command line arguments.
    1616
    1717The settings that can be defined are {{{dataSource}}} and {{{output}}}.  Both settings have a field called {{{type}}} that defines the class to be used as a source or output processor.  The further fields are specific for the {{{type}}} specified.
    … …  
    3333=== Available !DataSources
    3434
    35 There are three data sources at present, with others to be written as the need arises. The available ones are:
     35There are four data sources at present, with others to be written as the need arises. The available ones are:
    3636
    3737* !MsSqlDataSourceSet
    3838* !MySqlDataSourceSet
    3939* !OnyxDataSourceSet
     40* !CsvDataSourceSet
    4041
    4142The exact settings required for these shown in the page [[i2b2 - Mapped Importer Data Sources]]
    … …  
    4647Other data sources that might be useful are:
    4748
    48 * CSV
    4949* XML using XPATH
    5050* Other relational databases
    … …  
    107107* {{{type}}}: {{{uk.org.briccs.onyxmappedexport2pdo.fields.!BooleanTrueField}}}
    108108
    109 === !DataSourceConditionalExistenceField
     109==== !DataSourceConditionalExistenceField
    110110
    111111''' A N D   T H E   R E S T'''