Changes between Version 10 and Version 11 of i2b2 Mapped Importer


Ignore:
Timestamp:
11/07/13 15:33:45 (11 years ago)
Author:
Richard Bramley
Comment:

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  • i2b2 Mapped Importer

    v10 v11  
    3939* !OnyxDataSourceSet
    4040
    41 ==== !MsSqlDataSourceSet
     41The exact settings required for these shown in the page [[i2b2 - Mapped Importer Data Sources]]
    4242
    43 Settings
    44 
    45 * {{{type}}}: {{{uk.org.briccs.onyxmappedexport2pdo.input.sql.!MsSqlDataSourceSet}}}
    46 * {{{Server}}}: ''The name of the SQL Server''
    47 * {{{instance}}}: ''The name of the SQL Server instance'''
    48 * {{{database}}}: ''The name of the SQL Server database''
    49 * {{{username}}}: ''The username required to log on''
    50 * {{{password}}}: ''The password for the above user''
    51 * {{{query}}}: ''The query used to extract the patient data''
    52 
    53 The query should return a row for each patient, and contain a patient identifier.
    54 
    55 ===== Mapping Source
    56 
    57 The {{{source}}} attribute list for mappings (see later) should contain one item: the name of the field from the query.
    58 
    59 ==== !MySqlDataSourceSet
    60 
    61 Settings
    62 
    63 * {{{type}}}: {{{uk.org.briccs.onyxmappedexport2pdo.input.sql.MySqlDataSourceSet}}}
    64 * {{{Server}}}: ''The name of the SQL Server''
    65 * {{{database}}}: ''The name of the SQL Server database''
    66 * {{{username}}}: ''The username required to log on''
    67 * {{{password}}}: ''The password for the above user''
    68 * {{{query}}}: ''The query used to extract the patient data''
    69 
    70 The query should return a row for each patient, and contain a patient identifier.
    71 
    72 ===== Mapping Source
    73 
    74 The {{{source}}} attribute list for mappings (see later) should contain one item: the name of the field from the query.
    75 
    76 ==== !OnyxDataSourceSet
    77 
    78 Settings
    79 
    80 * {{{type}}}: uk.org.briccs.onyxmappedexport2pdo.onyx.!OnyxDataSourceSet
    81 * {{{export_directory}}}: ''The directory where the exported questionnaires are stored''
    82 
    83 This is a data source written to import questionnaire data exported from the Onyx questionnaire tool.
    84 
    85 The tool exports a set of questionnaires into a series of sub-directories, each directory containing the results for all patients for one questionnaire. Each questionnaire folder contains a file called {{{Entities.xml}}} that maps patients to numbered XML files within the same directory (for example {{{00000001.xml}}}).
    86 
    87 ===== Mapping Source
    88 
    89 The {{{source}}} attribute list for mappings (see later) should contain two
    90 items.  The first is the name of the questionnaire folder, the second is the name of the variable element within the patient's numbered XML file.
    9143
    9244==== Proposed Additional Data Sources