Changes between Initial Version and Version 1 of i2b2 Mapped Importer

Timestamp:

09/19/13 08:04:32 (11 years ago)

Author:

Richard Bramley

Comment:

--

i2b2 Mapped Importer

@@ +1 @@
+= i2b2 Mapped Importer
+
+Java program to take input from various sources and load it into i2b2.
+
+== Sources
+
+The aim is to allow any type of source to be used that comes in a per patient format.  For example, a CSV file with a row per patient, an XML file with a node per patient, a set of XML files with one per patient, or a database query with a row per patient.
+
+Multiple rows (etc) can be supplied for a single patient.
+
+== Outputs
+The data can be outputted as either an i2b2 PDO XML file or loaded directlt into an i2b2 database.
+
+== Settings
+The source and output used is defined is a YAML file.  By default this file is called settings.yaml in the application root directory, but the setings file path can be defined using the {{{-s=xxx}}} or {{{--settingsFilePath=xxx}}} command line arguments.
+
+The settings that can be defined are {{{dataSource}}} and {{{output}}}.  Both settings have a field called {{{type}}} that defines the class used to as a source or output processor.  The further fields are specific for the {{{type}}} specified.
+
+Here is an example settings file:
+{{{#!yaml
+output:
+ type: uk.org.briccs.onyxmappedexport2pdo.output.mssql.MsSqlOutput
+ server: Server Name
+ instance: Instance Name
+ database: Database Name
+ username: Username
+ password: Password
+dataSource:
+ type: uk.org.briccs.onyxmappedexport2pdo.onyx.OnyxDataSourceSet
+ export_directory: data
+}}}
+== Mapping