Changes between Initial Version and Version 1 of i2b2 Mapped Importer Data Sources


Ignore:
Timestamp:
11/07/13 15:35:27 (11 years ago)
Author:
Richard Bramley
Comment:

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  • i2b2 Mapped Importer Data Sources

    v1 v1  
     1= i2b2 - Mapped Importer Data Sources
     2
     3Below are the settings for the specific Data Sources for the i2b2 Mapped Importer
     4
     5== !MsSqlDataSourceSet
     6
     7Settings
     8
     9* {{{type}}}: {{{uk.org.briccs.onyxmappedexport2pdo.input.sql.MsSqlDataSourceSet}}}
     10* {{{Server}}}: ''The name of the SQL Server''
     11* {{{instance}}}: ''The name of the SQL Server instance'''
     12* {{{database}}}: ''The name of the SQL Server database''
     13* {{{username}}}: ''The username required to log on''
     14* {{{password}}}: ''The password for the above user''
     15* {{{query}}}: ''The query used to extract the patient data''
     16
     17The query should return a row for each patient, and contain a patient identifier.
     18
     19=== Mapping Source
     20
     21The {{{source}}} attribute list for mappings should contain one item: the name of the field from the query.
     22
     23== !MySqlDataSourceSet
     24
     25Settings
     26
     27* {{{type}}}: {{{uk.org.briccs.onyxmappedexport2pdo.input.sql.MySqlDataSourceSet}}}
     28* {{{Server}}}: ''The name of the SQL Server''
     29* {{{database}}}: ''The name of the SQL Server database''
     30* {{{username}}}: ''The username required to log on''
     31* {{{password}}}: ''The password for the above user''
     32* {{{query}}}: ''The query used to extract the patient data''
     33
     34The query should return a row for each patient, and contain a patient identifier.
     35
     36=== Mapping Source
     37
     38The {{{source}}} attribute list for mappings should contain one item: the name of the field from the query.
     39
     40== !OnyxDataSourceSet
     41
     42Settings
     43
     44* {{{type}}}: uk.org.briccs.onyxmappedexport2pdo.onyx.!OnyxDataSourceSet
     45* {{{export_directory}}}: ''The directory where the exported questionnaires are stored''
     46
     47This is a data source written to import questionnaire data exported from the Onyx questionnaire tool.
     48
     49The tool exports a set of questionnaires into a series of sub-directories, each directory containing the results for all patients for one questionnaire. Each questionnaire folder contains a file called {{{Entities.xml}}} that maps patients to numbered XML files within the same directory (for example {{{00000001.xml}}}).
     50
     51=== Mapping Source
     52
     53The {{{source}}} attribute list for mappings should contain two
     54items.  The first is the name of the questionnaire folder, the second is the name of the variable element within the patient's numbered XML file.
     55