Changes between Initial Version and Version 1 of Telomere Length Recording Application HowTo Install

Timestamp:

07/08/15 18:54:34 (9 years ago)

Author:

Richard Bramley

Comment:

--

Telomere Length Recording Application HowTo Install

@@ +1 @@
+= Telomere Length Recording Application HowTo Install
+
+Tags: [[Telomere Length Recording Application]] [[HowTo]] [[Install]] [[Pain in the proverbial]] [[UoL LAMP Server]]
+
+== Difficulties
+
+This installations is made more difficult by 3 things:
+
+1. Suse Linux does not have mod_wsgi in its repositories, so you're going to have to compile it.
+2. mod_wsgi seems picky about where it picks python apps and libraries from
+3. The LAMP servers don't put things where you'd expect them to be.
+4. Some other stuff that I don't quite understand
+
+== Proceduce
+
+1. [[HowTo Compile mod_wsgi for LAMP servers]]
+2. Copy the Telomere application from the `git` repository into `/local/` directory.
+3. Install virtualenv:
+
+{{{
+easy_install --install-dir=/local/python virtualenv
+}}}
+
+    ''For some reason that I can't work out (point 4. above), it would only pick up some of the python libraries from a virtual env and not when they were installed in `/local/python/`.  Maybe this was because of the order that I installed things, but I couldn't get it to work without the virtual environment.''
+4. Create a virtual environment in the telomere application directory.
+
+{{{
+cd /local/telomere
+/local/python/virtualenv --no-site-packages BASELINE
+}}}
+
+    ''`BASELINE` is the name of the virtual environment.  It could be called anything, but it's called that!  Also note that you need to use the full path to the `virtualenv` utility, since `/local/python` isn't in `$PATH`.''
+
+5. Activate the environment, install the required packages, then deactivate:
+
+{{{
+source BASELINE/bin/activate
+easy_install flask
+easy_install flask-sqlalchemy
+easy_install mysql-python
+easy_install flask-login
+easy_install python-ldap
+deactivate
+}}}
+
+6. Load the WSGI module into Apache, by editing the file `/local/apache2/etc/loadmodule.conf` by adding this line at the end.
+
+{{{
+LoadModule wsgi_module /local/apache2/etc/mod_wsgi.so
+}}}
+
+    ''This presumes that you've copied the compiled `mod_wsgi.so` file into the `/local/apache2/etc/` directory.''
+
+7. Add the WSGI config to the Apache config file `/local/apache2/etc/httpd.conf`:
+
+{{{
+<Directory /local/telomere>
+    WSGIProcessGroup telomere
+    WSGIApplicationGroup %{GLOBAL}
+    Order deny,allow
+    Allow from all
+</Directory>
+
+WSGIDaemonProcess telomere user=wwwrun threads=5 python-path=/local/telomere/BASELINE/lib/python2.6/site-packages:/local/python:/usr/lib64/python2.6/site-packages:/usr/share/doc/packages/ home=/local/telomere/
+WSGIScriptAlias / /local/telomere/app/telomere.wsgi
+}}}
+
+    ''The two hard won things here are the values for the `python-path` and `home` arguments.  The `python-path` must contain every directory where python libraries are installed, including a sub-directory of the virtualenv directory you created earlier.  The `home` must point to your application directory, or you won't be able to pick up your own modules.''
+
+8. Restart apache:
+
+{{{
+sudo /etc/init.d/uol.apache2 restart
+}}}
+
+9. Pray.
+
+[[BackLinks]]