Changes between Version 18 and Version 19 of OnyxDatabaseReporting


Ignore:
Timestamp:
12/20/13 13:15:55 (10 years ago)
Author:
Nick Holden
Comment:

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Legend:

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  • OnyxDatabaseReporting

    v18 v19  
    227227To extract all relevant (study specific and by diagnosis) recruits with their recruitment dates, for compiling into a spreadsheet, use:
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    231 mysql -h briccsdb -u auditor -p briccs_northampton -e " SELECT barcode as 'Participant', birth_date as 'DOB', start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, questionnaire_participant, interview, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND ( question_answer.question_name = 'epi_pridiag' OR question_answer.question_name = 'epi_secdiag' ) AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Aortic_Stenosis'  AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity' UNION SELECT barcode as 'Participant', birth_date as 'DOB',start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, interview, questionnaire_participant, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND question_answer.question_name = 'epi_type' AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Study_specific' AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity'; " > northampton-output.txt
    232 
    233 AND
    234 
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    236 mysql -h briccsdb -u auditor -p briccs -e " SELECT barcode as 'Participant', birth_date as 'DOB', start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, questionnaire_participant, interview, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND ( question_answer.question_name = 'epi_pridiag' OR question_answer.question_name = 'epi_secdiag' ) AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Aortic_Stenosis'  AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity' UNION SELECT barcode as 'Participant', birth_date as 'DOB',start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, interview, questionnaire_participant, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND question_answer.question_name = 'epi_type' AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Study_specific' AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity'; " > leicester-output.txt
     229NORTHAMPTON
     230
     231mysql -h briccsdb -u auditor -p briccs_northampton -e "
     232SELECT barcode as 'Participant', enrollment_id as 'S number', gender as 'Gender', birth_date as 'DOB', start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, questionnaire_participant, interview, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND ( question_answer.question_name = 'epi_pridiag' OR question_answer.question_name = 'epi_secdiag' ) AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Aortic_Stenosis' AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity' UNION
     233
     234SELECT barcode as 'Participant', enrollment_id as 'S number', gender as 'Gender', birth_date as 'DOB',start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, interview, questionnaire_participant, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND question_answer.question_name = 'epi_type' AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Study_specific' AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity'; " > northampton-output.txt
     235
     236
     237LEICESTER
     238
     239mysql -h briccsdb -u auditor -p briccs -e "
     240SELECT barcode as 'Participant', enrollment_id as 'S number', gender as 'Gender', birth_date as 'DOB', start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, questionnaire_participant, interview, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND ( question_answer.question_name = 'epi_pridiag' OR question_answer.question_name = 'epi_secdiag' ) AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Aortic_Stenosis' AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity' UNION
     241
     242SELECT barcode as 'Participant', enrollment_id as 'S number', gender as 'Gender', birth_date as 'DOB',start_date as 'Questionnaire Date', participant_attribute_value.text_value as 'Ethnic Origin' FROM participant, interview, questionnaire_participant, question_answer, category_answer, participant_attribute_value WHERE participant.id = questionnaire_participant.participant_id AND participant.id = interview.participant_id AND question_answer.questionnaire_participant_id = questionnaire_participant.id AND question_answer.question_name = 'epi_type' AND category_answer.question_answer_id = question_answer.id AND category_answer.category_name = 'Study_specific' AND participant_attribute_value.participant_id = participant.id AND participant_attribute_value.attribute_name = 'pat_ethnicity'; " > leicester-output.txt
    237243
    238244Note these searches will export ethnicity but not exclude by it.