wiki:CaTissue

Version 3 (modified by Nick Holden, 14 years ago) ( diff )

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From the CaTissue home page: "caTissue Suite is caBIG's biorepository tool for biospecimen inventory management, tracking, and annotation."

https://cabig.nci.nih.gov/tools/catissuesuite

We need to learn how to use the caTissue API. In particular:

  • what would it take to get the 2d bar code reader to feed caTissue with an array of sample barcodes, such that caTissue would check them against the database to verify that the samples are in the right box, and in the right location? Possibly without even knowing the ID of the box?
  • what would it take to be able to process more than one participant at a time through the collection protocol? Currently the submission process includes checking for empty data in form elements which presumably have the same ID in each open tab or window, thus throwing an error.

A note on user privileges in caTissue from Jeff. It is not our favoured model of privileges, but probably defined in the caBIG CSM (Common Security Model). We'd like more fine-grain privileges, but in the meantime this is how it works: "I (naively) thought that setting up privileges for each individual user would suffice. Seems reasonable. Then the penny dropped. What if I were doing admin on the protocol and wanted to stop people using it whilst changes were underway? If I were relying upon individual user privileges alone, I would have to go into each user and change their privilege, then do the protocol admin, then go back into each user again to re-enable their use. Very tedious. The way it is set up in caTissue, I can disable / enable wholesale privileges for one protocol with one admin action. Quite clever?"

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