Changes between Initial Version and Version 1 of CaTissue HowTo Build & Deploying CaTissue from the source code?

Timestamp:

11/23/11 17:42:05 (13 years ago)

Author:

somaraja.surampudi

Comment:

--

CaTissue HowTo Build & Deploying CaTissue from the source code?

@@ +1 @@
+1) Download caTissue suite from caTissue site (https://gforge.nci.nih.gov/frs/?group_id=689) named with caTissue v1.2 installable
+2) Once you have downloaded the caTISSUE_SUITE_v12_Installable_Pack.zip, extract the contents of the file to any directory.
+This folder contains two additional compressed files; caTissue_Suite_v1.2_Installable and caTissue_Suite_API_Client_v1.2_Installable
+3) Unzip the caTissue_Suite_v1.2_Installable.zip, extract the contents of the file to any directory. 
+4) Unzip the caTissue_Suite_API_Client_v1.2_Installable.zip, extract the contents of the file to any directory.
+5) In the installation folder caTissueInstall.properties is the Property file in which all the application configuration parameters are listed, we need to change it according to our local environment
+6) In the installation folder build.xml is ANT script used to deploy the application on a JBoss server. This also creates the database schema for Oracle or MySQL.
+7) In the installation folder SQL folder containing SQL scripts required for deployment
+8) In the installation folder modules folder containing various caTissue modules
+9) JBoss version should be 4.2.3 GA and Mysql version should be 5.0.45
+10) In order to prevent lower case problem in ubuntu mysql you have to set set lower_case_table_names=1 in your /etc/mysql/my.cnf file. 
+11) Once above step is done shutdown the mysql server and restart it.
+12) Before starting deployment make sure that jboss shouldn't be running.
+13) Create the database first (eg: catissuecore) in mysql before starting of the building the application, as shown below,
+
+Drop DATABASE if exists catissuecore;
+
+CREATE DATABASE catissuecore;
+
+GRANT ALL PRIVILEGES ON catissuecore.* TO 'root'@'localhost' IDENTIFIED BY 'root' WITH GRANT OPTION;
+
+GRANT ALL PRIVILEGES ON catissuecore.* TO 'root'@'%' IDENTIFIED BY 'root' WITH GRANT OPTION;
+
+USE mysql;
+
+UPDATE  User SET File_priv = 'Y' where User='root';
+
+FLUSH PRIVILEGES;
+
+14) Start deploying the catissue application using build.xml with the argument deploy_all, if you see any error while in deployment because of upgrade_metadata_cnstrProp.sql then uncomment ALTER TABLE DYEXTN_COLUMN_PROPERTIES TYPE = INNODB; and ALTER TABLE DYEXTN_CONSTRAINTKEY_PROP TYPE = INNODB; in the same file. Start redeploying the application.
+15) If you see any errors in building the application, once you resolved the issues freshly build the application with the arguments clean_server and delete_files (delete the previously created dependencies). Once this is done then you build the application with deploy_all.
+16) Once build is successful war file will be automatically deployed into your jboss, start the jboss server.
+17) Once the JBoss server is started, you can access the application using a web browser. The following is the URL pattern used for the application:
+http://machine_name:port_number/catissuecore.
+18) When the browser displays the home page of caTissue Suite, you can log on to the application by specifying the values which were configured in
+first.admin.emailAddress and first.admin.password of caTissueInstall.properties before deployment.
+
+
+
+
+Following is the sample caTissueInstall.properties file
+-------------------------------------------------------
+
+#Enter absolute path of the installed directory of JBoss server {JBOSS_HOME}.
+#Please note that the path must be separated by Unix style path separator "/".
+jboss.home.dir=/home/localadmin1/jboss-4.2.3.GA
+
+#Please specify the server configuration name of jboss where you want to deploy.
+#By default it is set to 'default' configuration. This is useful if someone wants
+#to run multiple instances of suite application on same jboss.
+jboss.server.name=default
+
+#Enter server port on which JBoss is listing the client request
+# Please do not specify the port number in case of an Apache Front ended server
+#Default port is 8080
+jboss.server.port=8080
+
+#Hostname or IP address of the machine on which the JBoss server is running.
+#CAUTION: This parameter should not be set to localhost. Set the actual hostname or IP address
+jboss.server.host=localhost
+
+#Enter yes/no to specify Secure HTTP connection
+jboss.container.secure=
+
+#database type permissible values: oracle or mysql
+database.type=mysql
+
+#Hostname or IP address of the machine on which the database server is running.
+database.host=localhost
+
+#Port number to connect with the database server
+#Default port for MySQL : 3306
+#Default Port for Oracle: 1521
+database.port=3306
+
+#Oracle TNS name, applicable only when database.type=oracle
+oracle.tns.name=
+
+database.name=catissuecore
+database.username=root
+database.password=root
+
+#If CAS authentication server needs to be deployed on the
+#same server as caTissue (specified by jboss.home.dir), then set this property to "true"
+deploy.cas.on.catissue.jboss=true
+
+#If cas.deploy is "false", then fill the following CAS related properties:
+#Hostname or IP address of the machine on which the CAS server is running.
+#CAUTION: This parameter should not be set to localhost. Set the actual hostname or IP address
+cas.jboss.server.host=
+cas.jboss.port=
+#Enter yes/no to specify Secure HTTP connection for CAS
+cas.jboss.container.secure=
+#CAS is deployed on HTTPS server then Specify the .keystore file path of CAS server.
+cas.server.keystore.path=
+
+email.administrative.emailAddress=
+email.sendEmailFrom.emailAddress=
+email.mailServer=
+
+# Option to use the common package's email handler on server exception. Values = [true|false]
+# Default = [false]
+use.email.commonpackage.config=false
+# Send the exception email to e-addresses. Can have comma seperated values.
+email.sendEmailTo.emailAddress=
+# Admin Email address. This would be included in case above entry is empty or invalid.
+email.admin.support.emailAddress=
+# Email-From Name.
+email.sendEmailFrom.name=
+# The subject line of the email.
+email.exception.subject=System Exception Occured.
+
+#Application login timeout interval in minutes.
+#Default value is 30 minutes
+session.timeout=30
+#sets the addition info on home page
+app.additional.info=
+
+#Information related to first administrator account
+first.admin.department=d
+first.admin.institution=i
+first.admin.cancerresearchgroup=c
+first.admin.emailAddress=admin@admin.com
+first.admin.password=Login123
+
+#Enter path for the MMTx home directory
+caties.mmtx.home=
+
+#Values for DE API
+caCORE.jBoss.home.dir=
+caCORE.project.name=
+
+#Choose below option to associate dynamic extensions default clinical and pathology forms to the Collection Protocols.
+#Choose false to show all clinical and pathology default annotations for data entry
+#Choose true and edit the Show_Hide_Forms.xml present in the installable folder to associate selective forms to Collection Protocol for data entry
+show.hide.forms.based.on.CPs=false
+
+#URL needed for category creation.
+Application.url=
+
+#Set the location where caCore is generated
+cacore.deployable.location=./cacore_deployable
+
+#Comma separated Entity Groups which are to be excluded.
+exclude.entitygroup=
+
+#Comma separated Entity Groups which are only to be included.
+include.entitygroup=
+
+#Set the owner for the old saved queries prior to v1.2. Enter the login name of the user whom
+#you want to make the owner.
+saved.query.owner=
+
+#CSM DATABASE CREDENTIALS
+csm.database.type=
+csm.database.host=
+csm.database.port=
+csm.database.name=
+csm.database.username=
+csm.database.password=