= [[OpenSpecimen Summary]]

Tags: [[LcbruSystem]]

== Overview

Sample management tool formerly called CaTissue which was developed  by the [[National Cancer Institute]], now developed by [[Krishagni]].

== Basic Overview

 Storage Container:: hierarchical set of containers that store samples.  For example, box, draw, shelf, freezer, room, building
 Storage Type:: A template for a Storage Container
 Site:: An real instance of a storage
 Collection Protocol:: A series of samples and aliquots derived from samples for a particular study.

== How To

- [[OpenSpecimen HowTo Install]]
- [[OpenSpecimen HowTo Restart]]
- [[OpenSpecimen HowTo Manage Users]]
- [[OpenSpecimen HowTo Create Protocol]]
- [[OpenSpecimen HowTo Create Searches]]
- [[OpenClinica HowTo View Map of Locations]]

== Modules and Updates

- [[CaTissueClientAPI]]

== Community

- [[http://www.openspecimen.org/|Open Specimen Website]]
- [[http://forums.openspecimen.org/|Open Specimen Forum]]

== Instances

For now: [[SystemAdmin]]

- [[OpenSepcimen Instance Development]]
- [[OpenSepcimen Instance Live]]
- [[OpenSepcimen Instance Training]]

== Check List

=== Standard

- [ ] Do I have admin rights to system?
- [ ] Can I log on to system?
- [ ] Can I restart the server?
- [ ] Can I create a user?
- [ ] Can I see the errors?
- [ ] Does it use Nick's email or other account details?
- [ ] Who do we contact for help
- [ ] Basic training
- [ ] Latest version in source control?
- [ ] How is it Backed Up?
- [ ] Database server / username / password
- [ ] Do I have admin database access?
- [ ] Database read only account?
- [ ] Apache config
- [/] Can I log onto the community websites?

=== Specific

- [ ] How to create protocols
- [ ] Backup protocols

== Legacy Pages

- [[CaTissue]]
- [[CaTissueBulkOperations]]
- [[CaTissueClientAPI]]
- [[CaTissueUpgrade]]
- [[CaTissueUseCases]]
- [[CaTissue search functions]]

[[BackLinks]]