= [[OpenSpecimen Summary]]

Tags: [[Lcbru Software Category]] [[Tomcat]]

== Overview

Sample management tool formerly called CaTissue which was developed  by the [[National Cancer Institute]], now developed by [[Krishagni]].

== Basic Overview

 Storage Container:: hierarchical set of containers that store samples.  For example, box, draw, shelf, freezer, room, building
 Storage Type:: A template for a Storage Container
 Site:: An real instance of a storage
 Collection Protocol:: A series of samples and aliquots derived from samples for a particular study.

== How To

- [[OpenSpecimen HowTo Build from Source Code]]
- [[OpenSpecimen HowTo Install]]
- [[OpenSpecimen HowTo Manage Users]]
- [[OpenSpecimen HowTo Create Protocol]]
- [[OpenSpecimen HowTo Create Searches]]
- [[OpenSpecimen HowTo View Map of Locations]]
- [[OpenSpecimen HowTo Backup Database for Development Server]]
- [[OpenSpecimen HowTo Use Expedited Entry for a Study]]
- [[OpenSpecimen HowTo Correct all details of Expedited Entry for all Studies]]
- [[OpenSpecimen HowTo Specify Format of Master Patient Index ID]]
- [[OpenSpecimen HowTo Register a participant into a protocol using the standard UI]]
- [[OpenSpecimen HowTo Register a participant into a protocol using the expedited UI]]
- [[OpenSpecimen HowTo Create Containers]]
- [[OpenSpecimen HowTo Import Bulk Data]]

== Gotchas

- [[OpenSpecimen Gotchas liquibase: Waiting for changelog lock]]
- [[OpenSpecimen Gotchas Sample Entry 'Specimen Label Required' Error]]

== Modules and Updates

- [[OpenSpecimen Leicester Custom Module]]

== Community / Documentation

- [[http://www.openspecimen.org/|Open Specimen Website]]
- [[http://forums.openspecimen.org/|Open Specimen Forum]]
- [[https://github.com/krishagni/openspecimen|OpenSpecimen Github Repository]]
- [[https://openspecimen.atlassian.net/wiki/display/CAT/Home|Open Specimen Documentation]]
- [[https://openspecimen.atlassian.net/wiki/display/CAT/REST+APIs|REST API Documentation]]
- [[https://openspecimen.atlassian.net/wiki/display/CAT/Deployment+steps|Deployment and Configuration]]
- [[https://github.com/krishagni/os-extensions|Expedited Entry Extension on Github]]

 Support:: support@openspecimen.org
 Support Developer:: nitesh.marwaha@krishagni.com

== Instances

For now: [[SystemAdmin]]

- [[OpenSpecimen Instance Development]]
- [[OpenSpecimen Instance Live]]
- [[OpenSpecimen Instance Training]]
- [[OpenSpecimen Instance Live Copy]]
- [[OpenSpecimen Instance Respiratory]]

[[BackLinks]]